Variant report

Variant	rs7770103
Chromosome Location	chr6:121865211-121865212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:121864722-121865249	SK-N-SH	brain:	n/a	chr6:121864965-121864975 chr6:121864804-121864813 chr6:121864888-121864898 chr6:121865046-121865055
2	TCF12	chr6:121864588-121865333	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr6:121864599-121865222	SK-N-SH	brain:	n/a	n/a
4	JUND	chr6:121864618-121865259	SK-N-SH	brain:	n/a	chr6:121864801-121864812 chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
5	GATA3	chr6:121864635-121865252	SK-N-SH	brain:	n/a	chr6:121864965-121864975 chr6:121864804-121864813 chr6:121864888-121864898 chr6:121865046-121865055

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121864729..121867208-chr6:121867323..121869414,2	MCF-7	breast:

Variant related genes	Relation type
RNU4-76P	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12208477	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1324095	0.88[ASN][1000 genomes]
rs2025428	0.85[ASN][1000 genomes]
rs4245510	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245511	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4560674	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945689	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946577	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6899546	0.88[ASN][1000 genomes]
rs6911887	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929186	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929781	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932915	0.82[ASN][1000 genomes]
rs6940732	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372658	0.90[ASN][1000 genomes]
rs9375037	0.88[ASN][1000 genomes]
rs9375041	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385201	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9387972	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398641	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401414	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9401415	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9482173	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482174	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9490317	0.88[ASN][1000 genomes]
rs9490319	0.87[ASN][1000 genomes]
rs9490320	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv528731	chr6:121857609-121875648	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv526935	chr6:121860377-121875648	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121854800-121867000	Weak transcription	NHEK	skin
2	chr6:121855000-121870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121855200-121866000	Weak transcription	HMEC	breast
4	chr6:121859800-121867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:121861400-121870600	Weak transcription	A549	lung
6	chr6:121864600-121866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:121864800-121865600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121864800-121866200	Enhancers	NH-A	brain
9	chr6:121864800-121866200	Enhancers	Osteobl	bone
10	chr6:121864800-121866400	Enhancers	NHDF-Ad	bronchial
11	chr6:121865000-121870600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:121865200-121865600	Enhancers	HUVEC	blood vessel
13	chr6:121865200-121866200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:121865200-121869400	Weak transcription	Muscle Satellite Cultured Cells	--

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