Variant report

Variant	rs9482839
Chromosome Location	chr6:128112616-128112617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9482840	1.00[AFR][1000 genomes]
rs9482841	1.00[AFR][1000 genomes]
rs9491864	1.00[AFR][1000 genomes]
rs9491865	1.00[AFR][1000 genomes]
rs9491868	1.00[AFR][1000 genomes]
rs9491869	1.00[AFR][1000 genomes]
rs9491870	1.00[AFR][1000 genomes]
rs9491871	1.00[AFR][1000 genomes]
rs9491874	1.00[AFR][1000 genomes]
rs9491875	1.00[AFR][1000 genomes]
rs9986503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128103600-128113800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:128104400-128113400	Weak transcription	Dnd41	blood
3	chr6:128106000-128114000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:128106200-128113600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:128107400-128119200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128110400-128121000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:128111400-128113200	Genic enhancers	Primary T cells from cord blood	blood
8	chr6:128111400-128117200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:128111600-128114000	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr6:128111600-128119400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:128111800-128112800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128111800-128113000	Strong transcription	Thymus	Thymus
13	chr6:128112000-128113000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:128112000-128117800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128112400-128113400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:128112400-128113800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:128112400-128119400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:128112600-128113000	ZNF genes & repeats	Fetal Thymus	thymus
19	chr6:128112600-128118400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links