Variant report

Variant	rs9482840
Chromosome Location	chr6:128122285-128122286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9482839	1.00[AFR][1000 genomes]
rs9482841	1.00[AFR][1000 genomes]
rs9491864	1.00[AFR][1000 genomes]
rs9491865	1.00[AFR][1000 genomes]
rs9491868	1.00[AFR][1000 genomes]
rs9491869	1.00[AFR][1000 genomes]
rs9491870	1.00[AFR][1000 genomes]
rs9491871	1.00[AFR][1000 genomes]
rs9491874	1.00[AFR][1000 genomes]
rs9491875	1.00[AFR][1000 genomes]
rs9986503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128116600-128129000	Strong transcription	Fetal Thymus	thymus
3	chr6:128117000-128131400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:128119200-128122400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:128119200-128124400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:128119200-128134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:128119400-128124000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:128119400-128124000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128119400-128125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:128121000-128124800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:128121200-128124000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128121400-128125400	Strong transcription	Primary T cells from cord blood	blood
13	chr6:128121400-128128200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:128121600-128124000	Strong transcription	Thymus	Thymus
15	chr6:128122000-128123800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:128122200-128122600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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