Variant report

Variant	rs9483402
Chromosome Location	chr6:132501794-132501795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59342169	0.82[AFR][1000 genomes]
rs6934052	1.00[AMR][1000 genomes]
rs73541985	1.00[AMR][1000 genomes]
rs73542000	1.00[AMR][1000 genomes]
rs73542001	1.00[AMR][1000 genomes]
rs73553800	1.00[AMR][1000 genomes]
rs73555603	1.00[AMR][1000 genomes]
rs9493224	0.86[AFR][1000 genomes]
rs9493225	0.86[AFR][1000 genomes]
rs9493228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493236	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:132501200-132501800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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