Variant report

Variant	rs73553800
Chromosome Location	chr6:132582758-132582759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11968915	1.00[EUR][1000 genomes]
rs1321264	1.00[EUR][1000 genomes]
rs1590188	1.00[EUR][1000 genomes]
rs1853050	1.00[EUR][1000 genomes]
rs1950683	1.00[EUR][1000 genomes]
rs1950684	1.00[EUR][1000 genomes]
rs56406631	1.00[EUR][1000 genomes]
rs58980974	1.00[EUR][1000 genomes]
rs60466189	1.00[EUR][1000 genomes]
rs61422817	1.00[EUR][1000 genomes]
rs6569783	1.00[EUR][1000 genomes]
rs6569784	1.00[EUR][1000 genomes]
rs6569787	1.00[EUR][1000 genomes]
rs6916284	1.00[EUR][1000 genomes]
rs6929031	1.00[EUR][1000 genomes]
rs6934052	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541952	1.00[EUR][1000 genomes]
rs73541985	1.00[AMR][1000 genomes]
rs73542000	1.00[AMR][1000 genomes]
rs73542001	1.00[AMR][1000 genomes]
rs73553745	1.00[EUR][1000 genomes]
rs73553772	1.00[EUR][1000 genomes]
rs73553774	1.00[EUR][1000 genomes]
rs73553777	1.00[EUR][1000 genomes]
rs73553786	1.00[EUR][1000 genomes]
rs73553792	1.00[EUR][1000 genomes]
rs73553798	1.00[EUR][1000 genomes]
rs73555603	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739155	1.00[EUR][1000 genomes]
rs7739770	1.00[EUR][1000 genomes]
rs7739798	1.00[EUR][1000 genomes]
rs7772278	1.00[EUR][1000 genomes]
rs9483402	1.00[AMR][1000 genomes]
rs9483418	1.00[EUR][1000 genomes]
rs9483420	1.00[EUR][1000 genomes]
rs9483421	1.00[EUR][1000 genomes]
rs9483426	1.00[EUR][1000 genomes]
rs9483427	1.00[EUR][1000 genomes]
rs9493228	1.00[AMR][1000 genomes]
rs9493248	1.00[EUR][1000 genomes]
rs9493250	1.00[EUR][1000 genomes]
rs9493251	1.00[EUR][1000 genomes]
rs9493253	1.00[EUR][1000 genomes]
rs9493256	1.00[EUR][1000 genomes]
rs9493258	1.00[EUR][1000 genomes]
rs9493261	1.00[EUR][1000 genomes]
rs9493262	1.00[EUR][1000 genomes]
rs9493263	1.00[EUR][1000 genomes]
rs9493264	1.00[EUR][1000 genomes]
rs9493266	1.00[EUR][1000 genomes]
rs9493267	1.00[EUR][1000 genomes]
rs9493271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
2	chr6:132581800-132583200	Enhancers	Fetal Muscle Leg	muscle
3	chr6:132581800-132583200	Enhancers	HSMM	muscle
4	chr6:132582400-132582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:132582600-132583200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:132582600-132583200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links