Variant report

Variant	rs6929031
Chromosome Location	chr6:132581214-132581215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132580912-132581496	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11968915	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1321264	1.00[EUR][1000 genomes]
rs1590188	1.00[EUR][1000 genomes]
rs1853050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950683	1.00[EUR][1000 genomes]
rs1950684	0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs56406631	1.00[EUR][1000 genomes]
rs58980974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60466189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569783	1.00[EUR][1000 genomes]
rs6569784	1.00[EUR][1000 genomes]
rs6569785	1.00[CHD][hapmap]
rs6569787	1.00[EUR][1000 genomes]
rs6916284	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6934052	1.00[EUR][1000 genomes]
rs73541952	1.00[EUR][1000 genomes]
rs73553745	1.00[EUR][1000 genomes]
rs73553772	1.00[EUR][1000 genomes]
rs73553774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553777	1.00[EUR][1000 genomes]
rs73553786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553792	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553798	1.00[EUR][1000 genomes]
rs73553800	1.00[EUR][1000 genomes]
rs73555603	1.00[EUR][1000 genomes]
rs7739155	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs7739770	1.00[EUR][1000 genomes]
rs7739798	1.00[EUR][1000 genomes]
rs7772278	1.00[EUR][1000 genomes]
rs9483418	1.00[EUR][1000 genomes]
rs9483420	1.00[EUR][1000 genomes]
rs9483421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483426	1.00[EUR][1000 genomes]
rs9483427	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9493248	1.00[EUR][1000 genomes]
rs9493250	0.90[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs9493251	1.00[EUR][1000 genomes]
rs9493253	1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493256	1.00[EUR][1000 genomes]
rs9493258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493261	1.00[EUR][1000 genomes]
rs9493262	1.00[EUR][1000 genomes]
rs9493263	1.00[EUR][1000 genomes]
rs9493264	1.00[EUR][1000 genomes]
rs9493266	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493267	1.00[EUR][1000 genomes]
rs9493271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
3	chr6:132580800-132581800	Weak transcription	Fetal Muscle Leg	muscle

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