Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:132574260..132576242-chr6:132578431..132580676,2	K562	blood:
2	6:132182612-132191683..6:132564401-132574898	Hela-S3	cervix:
3	6:132269655-132282174..6:132564401-132574898	GM12878	blood:
4	6:132176847-132180372..6:132564401-132574898	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10080410	0.93[AFR][1000 genomes]
rs10080548	1.00[ASW][hapmap]
rs10085235	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12111309	0.82[AFR][1000 genomes]
rs13437394	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13437560	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs57178246	0.93[AFR][1000 genomes]
rs60216627	0.93[AFR][1000 genomes]
rs6569786	1.00[AFR][1000 genomes]
rs6916284	0.82[ASW][hapmap]
rs6918490	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6918720	0.93[AFR][1000 genomes]
rs6920531	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6929031	1.00[CHD][hapmap]
rs7745723	0.93[AFR][1000 genomes]
rs7762252	0.93[AFR][1000 genomes]
rs7771231	0.87[LWK][hapmap]
rs7772465	0.87[AFR][1000 genomes]
rs9321335	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9483419	0.86[AFR][1000 genomes]
rs9493247	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9493259	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9493268	0.93[AFR][1000 genomes]
rs9493269	0.90[AFR][1000 genomes]
rs9493270	0.93[AFR][1000 genomes]
rs9493274	0.82[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6569785	LINGO3	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132573400-132575800	Enhancers	NHDF-Ad	bronchial
3	chr6:132573600-132575200	Weak transcription	Aorta	Aorta
4	chr6:132574000-132575200	Weak transcription	HMEC	breast
5	chr6:132574600-132574800	Enhancers	Stomach Mucosa	stomach

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