Variant report
Variant | rs10085235 |
---|---|
Chromosome Location | chr6:132603837-132603838 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 6:132182612-132191683..6:132603806-132609367 | Hela-S3 | cervix: | |
2 | chr6:132603488..132605263-chr6:132623712..132625367,2 | K562 | blood: | |
3 | chr6:132602615..132605201-chr6:132605741..132608380,2 | K562 | blood: | |
4 | 6:132269655-132282174..6:132603806-132609367 | Hela-S3 | cervix: | |
5 | chr6:132603647..132605182-chr6:132815819..132818802,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000227220 | Chromatin interaction |
ENSG00000118523 | Chromatin interaction |
ENSG00000197594 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10080410 | 1.00[AFR][1000 genomes] |
rs13437394 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
rs13437560 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs57178246 | 1.00[AFR][1000 genomes] |
rs60216627 | 1.00[AFR][1000 genomes] |
rs6569785 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
rs6569786 | 0.93[AFR][1000 genomes] |
rs6918490 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs6918720 | 1.00[AFR][1000 genomes] |
rs6920531 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs7745723 | 1.00[AFR][1000 genomes] |
rs7762252 | 1.00[AFR][1000 genomes] |
rs7772465 | 0.81[AFR][1000 genomes] |
rs9321335 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
rs9483419 | 0.93[AFR][1000 genomes] |
rs9493247 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs9493259 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs9493268 | 1.00[AFR][1000 genomes] |
rs9493269 | 0.96[AFR][1000 genomes] |
rs9493270 | 1.00[AFR][1000 genomes] |
rs9493274 | 0.85[YRI][hapmap];1.00[AFR][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:132601200-132606200 | Weak transcription | Skeletal Muscle Male | skeletal muscle |