Variant report

Variant	rs13437394
Chromosome Location	chr6:132579183-132579184
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10080410	0.90[AFR][1000 genomes]
rs10085235	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs13437560	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs57178246	0.90[AFR][1000 genomes]
rs60216627	0.90[AFR][1000 genomes]
rs6569785	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6569786	0.84[AFR][1000 genomes]
rs6918490	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6918720	0.90[AFR][1000 genomes]
rs6920531	1.00[YRI][hapmap]
rs72994825	1.00[ASN][1000 genomes]
rs7745723	0.90[AFR][1000 genomes]
rs7762252	0.90[AFR][1000 genomes]
rs9321335	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9483419	0.84[AFR][1000 genomes]
rs9493247	1.00[YRI][hapmap]
rs9493259	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9493268	0.90[AFR][1000 genomes]
rs9493269	0.87[AFR][1000 genomes]
rs9493270	0.90[AFR][1000 genomes]
rs9493274	0.85[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
3	chr6:132578400-132579800	Enhancers	Stomach Mucosa	stomach
4	chr6:132578600-132580200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:132578600-132580400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:132578600-132580600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:132578600-132580600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:132578600-132580600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:132579000-132579200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:132579000-132579200	Bivalent Enhancer	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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