Variant report

Variant	rs9483419
Chromosome Location	chr6:132583226-132583227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080410	0.93[AFR][1000 genomes]
rs10085235	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs13437394	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13437560	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs57178246	0.93[AFR][1000 genomes]
rs60216627	0.93[AFR][1000 genomes]
rs6569785	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6569786	0.86[AFR][1000 genomes]
rs6918490	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6918720	0.93[AFR][1000 genomes]
rs6920531	1.00[YRI][hapmap]
rs7745723	0.93[AFR][1000 genomes]
rs7759103	1.00[AMR][1000 genomes]
rs7762252	0.93[AFR][1000 genomes]
rs9321335	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9483413	1.00[AMR][1000 genomes]
rs9493247	1.00[YRI][hapmap]
rs9493259	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9493265	1.00[AMR][1000 genomes]
rs9493268	0.93[AFR][1000 genomes]
rs9493269	0.90[AFR][1000 genomes]
rs9493270	0.93[AFR][1000 genomes]
rs9493274	0.85[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
2	chr6:132583200-132583600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132583200-132583800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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