Variant report

Variant	rs9321335
Chromosome Location	chr6:132572284-132572285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10080410	0.93[AFR][1000 genomes]
rs10085235	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12111309	0.82[AFR][1000 genomes]
rs13437394	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13437560	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs57178246	0.93[AFR][1000 genomes]
rs60216627	0.93[AFR][1000 genomes]
rs6569785	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6569786	1.00[AFR][1000 genomes]
rs6918490	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6918720	0.93[AFR][1000 genomes]
rs6920531	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7745723	0.93[AFR][1000 genomes]
rs7762252	0.93[AFR][1000 genomes]
rs7772465	0.87[AFR][1000 genomes]
rs9483419	0.86[AFR][1000 genomes]
rs9493247	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9493259	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9493268	0.93[AFR][1000 genomes]
rs9493269	0.90[AFR][1000 genomes]
rs9493270	0.93[AFR][1000 genomes]
rs9493274	0.85[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132567600-132573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:132568800-132572400	Weak transcription	NHEK	skin
3	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132572200-132574000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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