Variant report

Variant	rs6916284
Chromosome Location	chr6:132578875-132578876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132574260..132576242-chr6:132578431..132580676,2	K562	blood:
2	6:132269655-132282174..6:132575568-132580912	GM12878	blood:
3	6:132182612-132191683..6:132575568-132580912	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10080548	0.82[ASW][hapmap]
rs11968915	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1321264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13437560	0.82[ASW][hapmap]
rs1590188	1.00[EUR][1000 genomes]
rs17060966	1.00[MEX][hapmap]
rs1853050	1.00[EUR][1000 genomes]
rs1950683	1.00[EUR][1000 genomes]
rs1950684	1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs56406631	1.00[EUR][1000 genomes]
rs58980974	1.00[EUR][1000 genomes]
rs60466189	1.00[EUR][1000 genomes]
rs61422817	1.00[EUR][1000 genomes]
rs6569783	1.00[EUR][1000 genomes]
rs6569784	1.00[EUR][1000 genomes]
rs6569785	0.82[ASW][hapmap]
rs6569787	1.00[EUR][1000 genomes]
rs6929031	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6934052	1.00[EUR][1000 genomes]
rs73541952	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553745	1.00[EUR][1000 genomes]
rs73553772	1.00[EUR][1000 genomes]
rs73553774	1.00[EUR][1000 genomes]
rs73553777	1.00[EUR][1000 genomes]
rs73553786	1.00[EUR][1000 genomes]
rs73553792	1.00[EUR][1000 genomes]
rs73553798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553800	1.00[EUR][1000 genomes]
rs73555603	1.00[EUR][1000 genomes]
rs7739155	1.00[EUR][1000 genomes]
rs7739770	1.00[EUR][1000 genomes]
rs7739798	1.00[EUR][1000 genomes]
rs7772278	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9483418	1.00[EUR][1000 genomes]
rs9483420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483421	1.00[EUR][1000 genomes]
rs9483426	1.00[EUR][1000 genomes]
rs9483427	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9493248	1.00[EUR][1000 genomes]
rs9493250	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9493251	1.00[EUR][1000 genomes]
rs9493253	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9493256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493258	1.00[EUR][1000 genomes]
rs9493261	1.00[EUR][1000 genomes]
rs9493262	1.00[EUR][1000 genomes]
rs9493263	1.00[EUR][1000 genomes]
rs9493264	1.00[EUR][1000 genomes]
rs9493266	1.00[EUR][1000 genomes]
rs9493267	1.00[EUR][1000 genomes]
rs9493271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
3	chr6:132578400-132579800	Enhancers	Stomach Mucosa	stomach
4	chr6:132578600-132580200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:132578600-132580400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:132578600-132580600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:132578600-132580600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:132578600-132580600	Enhancers	HUES6 Cell Line	embryonic stem cell

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