Variant report

Variant	rs17060966
Chromosome Location	chr6:132379237-132379238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17060950	1.00[MEX][hapmap]
rs17060951	1.00[MEX][hapmap]
rs17061007	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2022612	1.00[EUR][1000 genomes]
rs2327193	1.00[EUR][1000 genomes]
rs55742557	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57075525	1.00[EUR][1000 genomes]
rs58299965	1.00[EUR][1000 genomes]
rs58884491	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906828	1.00[EUR][1000 genomes]
rs6909873	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916284	1.00[MEX][hapmap]
rs73543504	1.00[EUR][1000 genomes]
rs73543507	1.00[EUR][1000 genomes]
rs73543511	1.00[EUR][1000 genomes]
rs73543527	1.00[EUR][1000 genomes]
rs73543545	1.00[EUR][1000 genomes]
rs73543554	1.00[EUR][1000 genomes]
rs73543593	1.00[EUR][1000 genomes]
rs73545551	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73545576	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73545600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547580	1.00[EUR][1000 genomes]
rs73547586	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547600	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779148	1.00[EUR][1000 genomes]
rs9321316	1.00[EUR][1000 genomes]
rs9483367	1.00[EUR][1000 genomes]
rs9483368	1.00[EUR][1000 genomes]
rs9483369	1.00[EUR][1000 genomes]
rs9493165	1.00[EUR][1000 genomes]
rs9885614	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:132376200-132379400	Weak transcription	Osteobl	bone
5	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:132376600-132380200	Weak transcription	NHLF	lung
7	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:132377400-132379800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:132378600-132379400	Weak transcription	NHDF-Ad	bronchial
10	chr6:132378600-132379600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:132378600-132381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:132379200-132380400	Enhancers	Colon Smooth Muscle	Colon
13	chr6:132379200-132381800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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