Variant report
| Variant | rs73543554 |
|---|---|
| Chromosome Location | chr6:132336400-132336401 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:132334438..132336912-chr6:132342769..132344935,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs17060950 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17060951 | 0.87[AMR][1000 genomes] |
| rs17060953 | 0.87[AMR][1000 genomes] |
| rs17060955 | 0.87[AMR][1000 genomes] |
| rs17060966 | 1.00[EUR][1000 genomes] |
| rs17061007 | 1.00[EUR][1000 genomes] |
| rs2022612 | 1.00[EUR][1000 genomes] |
| rs2327193 | 1.00[EUR][1000 genomes] |
| rs55742557 | 1.00[EUR][1000 genomes] |
| rs57075525 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58299965 | 1.00[EUR][1000 genomes] |
| rs58884491 | 1.00[EUR][1000 genomes] |
| rs61085013 | 1.00[EUR][1000 genomes] |
| rs6906828 | 1.00[EUR][1000 genomes] |
| rs6909873 | 1.00[EUR][1000 genomes] |
| rs73543504 | 1.00[EUR][1000 genomes] |
| rs73543507 | 1.00[EUR][1000 genomes] |
| rs73543511 | 1.00[EUR][1000 genomes] |
| rs73543527 | 1.00[EUR][1000 genomes] |
| rs73543545 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73543574 | 0.87[AMR][1000 genomes] |
| rs73543593 | 1.00[EUR][1000 genomes] |
| rs73545509 | 0.87[AMR][1000 genomes] |
| rs73545518 | 0.87[AMR][1000 genomes] |
| rs73545551 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73545576 | 1.00[EUR][1000 genomes] |
| rs73545600 | 1.00[EUR][1000 genomes] |
| rs73547580 | 1.00[EUR][1000 genomes] |
| rs73547586 | 1.00[EUR][1000 genomes] |
| rs73547600 | 1.00[EUR][1000 genomes] |
| rs73779148 | 1.00[EUR][1000 genomes] |
| rs9321316 | 1.00[EUR][1000 genomes] |
| rs9483367 | 1.00[EUR][1000 genomes] |
| rs9483368 | 1.00[EUR][1000 genomes] |
| rs9483369 | 1.00[EUR][1000 genomes] |
| rs9493165 | 1.00[EUR][1000 genomes] |
| rs9885614 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470861 | chr6:132291785-132351866 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv886672 | chr6:132299748-132349215 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv886673 | chr6:132299748-132363507 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132334000-132337200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
