Variant report

Variant	rs73543574
Chromosome Location	chr6:132344821-132344822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17060950	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060955	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57075525	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543554	0.87[AMR][1000 genomes]
rs73545509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132340200-132346800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:132340800-132345000	Enhancers	HepG2	liver
3	chr6:132342800-132345000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:132343000-132345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:132343000-132345200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:132343400-132345200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:132343400-132346600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:132343600-132346600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:132343600-132346800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:132343600-132347200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132343600-132348800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:132343800-132346600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:132344000-132346800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:132344600-132345600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:132344600-132346800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:132344800-132346400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:132344800-132346600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:132344800-132346600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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