Variant report

Variant	rs17060950
Chromosome Location	chr6:132338201-132338202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17060951	1.00[MEX][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060953	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060955	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060966	1.00[MEX][hapmap]
rs57075525	0.87[AMR][1000 genomes]
rs73543554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545509	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545518	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545551	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132337400-132339200	Weak transcription	NHDF-Ad	bronchial
2	chr6:132338000-132340800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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