Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132386945-132395246	GM12878	blood:
2	6:132182612-132191683..6:132386945-132395246	Hela-S3	cervix:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17060966	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2022612	1.00[EUR][1000 genomes]
rs2327193	1.00[EUR][1000 genomes]
rs55742557	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57075525	1.00[EUR][1000 genomes]
rs58299965	1.00[EUR][1000 genomes]
rs58884491	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906828	1.00[EUR][1000 genomes]
rs6909873	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543504	1.00[EUR][1000 genomes]
rs73543507	1.00[EUR][1000 genomes]
rs73543511	1.00[EUR][1000 genomes]
rs73543527	1.00[EUR][1000 genomes]
rs73543545	1.00[EUR][1000 genomes]
rs73543554	1.00[EUR][1000 genomes]
rs73543593	1.00[EUR][1000 genomes]
rs73545551	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73545576	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73545600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547580	1.00[EUR][1000 genomes]
rs73547586	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547600	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73779148	1.00[EUR][1000 genomes]
rs9321316	1.00[EUR][1000 genomes]
rs9483367	1.00[EUR][1000 genomes]
rs9483368	1.00[EUR][1000 genomes]
rs9483369	1.00[EUR][1000 genomes]
rs9493165	1.00[EUR][1000 genomes]
rs9885614	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132386200-132394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:132389200-132394000	Weak transcription	NHDF-Ad	bronchial
3	chr6:132390800-132393600	Weak transcription	Osteobl	bone
4	chr6:132392000-132393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132392000-132405000	Weak transcription	HMEC	breast
6	chr6:132392000-132405400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:132392200-132394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:132392800-132394600	Enhancers	HUVEC	blood vessel

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