Variant report
| Variant | rs73547600 |
|---|---|
| Chromosome Location | chr6:132433533-132433534 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227220 | Chromatin interaction |
| ENSG00000118523 | Chromatin interaction |
| ENSG00000197594 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs17060966 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17061007 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2022612 | 1.00[EUR][1000 genomes] |
| rs2327193 | 1.00[EUR][1000 genomes] |
| rs55742557 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57075525 | 1.00[EUR][1000 genomes] |
| rs58299965 | 1.00[EUR][1000 genomes] |
| rs58884491 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61085013 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6906828 | 1.00[EUR][1000 genomes] |
| rs6909873 | 0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73543504 | 1.00[EUR][1000 genomes] |
| rs73543507 | 1.00[EUR][1000 genomes] |
| rs73543511 | 1.00[EUR][1000 genomes] |
| rs73543527 | 1.00[EUR][1000 genomes] |
| rs73543545 | 1.00[EUR][1000 genomes] |
| rs73543554 | 1.00[EUR][1000 genomes] |
| rs73543593 | 1.00[EUR][1000 genomes] |
| rs73545551 | 1.00[EUR][1000 genomes] |
| rs73545576 | 1.00[EUR][1000 genomes] |
| rs73545600 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73547580 | 1.00[EUR][1000 genomes] |
| rs73547586 | 0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73779148 | 1.00[EUR][1000 genomes] |
| rs9321316 | 1.00[EUR][1000 genomes] |
| rs9483367 | 1.00[EUR][1000 genomes] |
| rs9483368 | 1.00[EUR][1000 genomes] |
| rs9483369 | 1.00[EUR][1000 genomes] |
| rs9493165 | 1.00[EUR][1000 genomes] |
| rs9885614 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132423200-132436800 | Weak transcription | Aorta | Aorta |
| 2 | chr6:132423600-132435400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
