Variant report

Variant	rs73779148
Chromosome Location	chr6:132254554-132254555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000079931	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17060966	1.00[EUR][1000 genomes]
rs17061007	1.00[EUR][1000 genomes]
rs2022612	1.00[EUR][1000 genomes]
rs2327193	1.00[EUR][1000 genomes]
rs55742557	1.00[EUR][1000 genomes]
rs57075525	1.00[EUR][1000 genomes]
rs58299965	1.00[EUR][1000 genomes]
rs58884491	1.00[EUR][1000 genomes]
rs61085013	1.00[EUR][1000 genomes]
rs6906828	1.00[EUR][1000 genomes]
rs6909873	1.00[EUR][1000 genomes]
rs73543504	1.00[EUR][1000 genomes]
rs73543507	1.00[EUR][1000 genomes]
rs73543511	1.00[EUR][1000 genomes]
rs73543527	1.00[EUR][1000 genomes]
rs73543545	1.00[EUR][1000 genomes]
rs73543554	1.00[EUR][1000 genomes]
rs73543593	1.00[EUR][1000 genomes]
rs73545551	1.00[EUR][1000 genomes]
rs73545576	1.00[EUR][1000 genomes]
rs73545600	1.00[EUR][1000 genomes]
rs73547580	1.00[EUR][1000 genomes]
rs73547586	1.00[EUR][1000 genomes]
rs73547600	1.00[EUR][1000 genomes]
rs73779151	0.84[AFR][1000 genomes]
rs9321316	1.00[EUR][1000 genomes]
rs9483367	1.00[EUR][1000 genomes]
rs9483368	1.00[EUR][1000 genomes]
rs9483369	1.00[EUR][1000 genomes]
rs9493165	1.00[EUR][1000 genomes]
rs9885614	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132237200-132258600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:132240600-132258400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:132240600-132258800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:132241000-132258400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:132245600-132258400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:132247800-132258400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:132247800-132258600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:132250800-132258400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:132250800-132258600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:132252800-132258200	Weak transcription	NHDF-Ad	bronchial
11	chr6:132253200-132258400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:132253400-132256200	Weak transcription	HepG2	liver
13	chr6:132253400-132258200	Weak transcription	NHLF	lung
14	chr6:132253400-132258400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:132253400-132258400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132253600-132255200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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