Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132326365-132328366	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17060966	1.00[EUR][1000 genomes]
rs17061007	1.00[EUR][1000 genomes]
rs2022612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742557	1.00[EUR][1000 genomes]
rs57075525	1.00[EUR][1000 genomes]
rs58299965	1.00[EUR][1000 genomes]
rs58884491	1.00[EUR][1000 genomes]
rs61085013	1.00[EUR][1000 genomes]
rs6906828	1.00[EUR][1000 genomes]
rs6909873	1.00[EUR][1000 genomes]
rs73543504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543507	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543511	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543545	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543554	1.00[EUR][1000 genomes]
rs73543593	1.00[EUR][1000 genomes]
rs73545551	1.00[EUR][1000 genomes]
rs73545576	1.00[EUR][1000 genomes]
rs73545600	1.00[EUR][1000 genomes]
rs73547580	1.00[EUR][1000 genomes]
rs73547586	1.00[EUR][1000 genomes]
rs73547600	1.00[EUR][1000 genomes]
rs73779148	1.00[EUR][1000 genomes]
rs9321316	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs957535	0.83[AMR][1000 genomes]
rs9885614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv970350	chr6:132317890-132327515	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132325600-132327000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:132325800-132327000	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:132325800-132327000	Enhancers	Fetal Intestine Small	intestine
4	chr6:132325800-132327000	Enhancers	HepG2	liver
5	chr6:132325800-132327200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:132326000-132327000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:132326000-132327000	Enhancers	HUVEC	blood vessel
8	chr6:132326000-132327200	Enhancers	Fetal Intestine Large	intestine
9	chr6:132326000-132330400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:132326200-132328200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132326600-132327000	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:132326800-132327000	Enhancers	Stomach Mucosa	stomach
13	chr6:132326800-132332000	Weak transcription	Aorta	Aorta

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