Variant report
| Variant | rs73547580 |
|---|---|
| Chromosome Location | chr6:132421175-132421176 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ENPP1-3 | chr6:132419818-132421535 | NONHSAT114937 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs17060966 | 1.00[EUR][1000 genomes] |
| rs17061007 | 1.00[EUR][1000 genomes] |
| rs2022612 | 1.00[EUR][1000 genomes] |
| rs2327193 | 1.00[EUR][1000 genomes] |
| rs55742557 | 1.00[EUR][1000 genomes] |
| rs57075525 | 1.00[EUR][1000 genomes] |
| rs58299965 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58884491 | 1.00[EUR][1000 genomes] |
| rs61085013 | 1.00[EUR][1000 genomes] |
| rs6906828 | 1.00[EUR][1000 genomes] |
| rs6909873 | 1.00[EUR][1000 genomes] |
| rs73543504 | 1.00[EUR][1000 genomes] |
| rs73543507 | 1.00[EUR][1000 genomes] |
| rs73543511 | 1.00[EUR][1000 genomes] |
| rs73543527 | 1.00[EUR][1000 genomes] |
| rs73543545 | 1.00[EUR][1000 genomes] |
| rs73543554 | 1.00[EUR][1000 genomes] |
| rs73543593 | 1.00[EUR][1000 genomes] |
| rs73545551 | 1.00[EUR][1000 genomes] |
| rs73545576 | 1.00[EUR][1000 genomes] |
| rs73545600 | 1.00[EUR][1000 genomes] |
| rs73547586 | 1.00[EUR][1000 genomes] |
| rs73547600 | 1.00[EUR][1000 genomes] |
| rs73779148 | 1.00[EUR][1000 genomes] |
| rs9321316 | 1.00[EUR][1000 genomes] |
| rs9483367 | 1.00[EUR][1000 genomes] |
| rs9483368 | 1.00[EUR][1000 genomes] |
| rs9483369 | 1.00[EUR][1000 genomes] |
| rs9493165 | 1.00[EUR][1000 genomes] |
| rs9885614 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132420600-132423600 | Enhancers | Fetal Heart | heart |
| 2 | chr6:132420800-132422800 | Weak transcription | Aorta | Aorta |
