Variant report
Variant | rs1853050 |
---|---|
Chromosome Location | chr6:132580836-132580837 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:132244286..132245237-chr6:132580368..132580917,6 | MCF-7 | breast: | |
2 | 6:132269655-132282174..6:132575568-132580912 | GM12878 | blood: | |
3 | 6:132182612-132191683..6:132575568-132580912 | Hela-S3 | cervix: | |
4 | chr6:132245752..132246616-chr6:132580048..132580875,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000118523 | Chromatin interaction |
ENSG00000227220 | Chromatin interaction |
ENSG00000197594 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11968915 | 1.00[EUR][1000 genomes] |
rs1321264 | 1.00[EUR][1000 genomes] |
rs1590188 | 1.00[EUR][1000 genomes] |
rs1950683 | 1.00[EUR][1000 genomes] |
rs1950684 | 1.00[EUR][1000 genomes] |
rs56406631 | 1.00[EUR][1000 genomes] |
rs58980974 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60466189 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61422817 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6569783 | 1.00[EUR][1000 genomes] |
rs6569784 | 1.00[EUR][1000 genomes] |
rs6569787 | 1.00[EUR][1000 genomes] |
rs6916284 | 1.00[EUR][1000 genomes] |
rs6929031 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6934052 | 1.00[EUR][1000 genomes] |
rs73541952 | 1.00[EUR][1000 genomes] |
rs73553745 | 1.00[EUR][1000 genomes] |
rs73553772 | 1.00[EUR][1000 genomes] |
rs73553774 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73553777 | 1.00[EUR][1000 genomes] |
rs73553786 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73553792 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73553798 | 1.00[EUR][1000 genomes] |
rs73553800 | 1.00[EUR][1000 genomes] |
rs73555603 | 1.00[EUR][1000 genomes] |
rs7739155 | 1.00[EUR][1000 genomes] |
rs7739770 | 1.00[EUR][1000 genomes] |
rs7739798 | 1.00[EUR][1000 genomes] |
rs7772278 | 1.00[EUR][1000 genomes] |
rs9483418 | 1.00[EUR][1000 genomes] |
rs9483420 | 1.00[EUR][1000 genomes] |
rs9483421 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9483426 | 1.00[EUR][1000 genomes] |
rs9483427 | 1.00[EUR][1000 genomes] |
rs9493248 | 1.00[EUR][1000 genomes] |
rs9493250 | 1.00[EUR][1000 genomes] |
rs9493251 | 1.00[EUR][1000 genomes] |
rs9493253 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9493256 | 1.00[EUR][1000 genomes] |
rs9493258 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9493261 | 1.00[EUR][1000 genomes] |
rs9493262 | 1.00[EUR][1000 genomes] |
rs9493263 | 1.00[EUR][1000 genomes] |
rs9493264 | 1.00[EUR][1000 genomes] |
rs9493266 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9493267 | 1.00[EUR][1000 genomes] |
rs9493271 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:132569600-132581600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr6:132575400-132588400 | Weak transcription | Aorta | Aorta |
3 | chr6:132580800-132581800 | Weak transcription | Fetal Muscle Leg | muscle |