Variant report

Variant	rs73553745
Chromosome Location	chr6:132568981-132568982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132182612-132191683..6:132564401-132574898	Hela-S3	cervix:
2	6:132269655-132282174..6:132564401-132574898	GM12878	blood:
3	6:132176847-132180372..6:132564401-132574898	K562	blood:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11968915	1.00[EUR][1000 genomes]
rs1321264	1.00[EUR][1000 genomes]
rs1590188	1.00[EUR][1000 genomes]
rs1853050	1.00[EUR][1000 genomes]
rs1950683	1.00[EUR][1000 genomes]
rs1950684	1.00[EUR][1000 genomes]
rs56406631	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58980974	1.00[EUR][1000 genomes]
rs60466189	1.00[EUR][1000 genomes]
rs61422817	1.00[EUR][1000 genomes]
rs6569783	1.00[EUR][1000 genomes]
rs6569784	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6569787	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6916284	1.00[EUR][1000 genomes]
rs6929031	1.00[EUR][1000 genomes]
rs6934052	1.00[EUR][1000 genomes]
rs73541952	1.00[EUR][1000 genomes]
rs73553722	0.81[AMR][1000 genomes]
rs73553772	1.00[EUR][1000 genomes]
rs73553774	1.00[EUR][1000 genomes]
rs73553777	1.00[EUR][1000 genomes]
rs73553786	1.00[EUR][1000 genomes]
rs73553792	1.00[EUR][1000 genomes]
rs73553798	1.00[EUR][1000 genomes]
rs73553800	1.00[EUR][1000 genomes]
rs73555603	1.00[EUR][1000 genomes]
rs7739155	1.00[EUR][1000 genomes]
rs7739770	1.00[EUR][1000 genomes]
rs7739798	1.00[EUR][1000 genomes]
rs7772278	1.00[EUR][1000 genomes]
rs9483418	1.00[EUR][1000 genomes]
rs9483420	1.00[EUR][1000 genomes]
rs9483421	1.00[EUR][1000 genomes]
rs9483426	1.00[EUR][1000 genomes]
rs9483427	1.00[EUR][1000 genomes]
rs9493248	1.00[EUR][1000 genomes]
rs9493250	1.00[EUR][1000 genomes]
rs9493251	1.00[EUR][1000 genomes]
rs9493253	1.00[EUR][1000 genomes]
rs9493256	1.00[EUR][1000 genomes]
rs9493258	1.00[EUR][1000 genomes]
rs9493261	1.00[EUR][1000 genomes]
rs9493262	1.00[EUR][1000 genomes]
rs9493263	1.00[EUR][1000 genomes]
rs9493264	1.00[EUR][1000 genomes]
rs9493266	1.00[EUR][1000 genomes]
rs9493267	1.00[EUR][1000 genomes]
rs9493271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132567400-132569000	Enhancers	Ovary	ovary
2	chr6:132567400-132569200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132567600-132573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:132568200-132569000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:132568200-132569000	Enhancers	NHLF	lung
6	chr6:132568200-132569600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:132568400-132569000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:132568400-132569200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132568400-132569600	Enhancers	Osteobl	bone
10	chr6:132568600-132569000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:132568600-132569200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132568800-132572400	Weak transcription	NHEK	skin

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