Variant report
| Variant | rs9483512 |
|---|---|
| Chromosome Location | chr6:133214452-133214453 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RPS12-4 | chr6:133213063-133214958 | NONHSAT114984 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112306 | Chromatin interaction |
| ENSG00000206754 | Chromatin interaction |
| ENSG00000200534 | Chromatin interaction |
| ENSG00000221500 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1408061 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6911037 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9483507 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9483510 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493461 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493463 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493471 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493473 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493479 | 1.00[ASW][hapmap];0.83[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9493485 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv869855 | chr6:133190265-133244259 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
