Variant report

Variant	rs9493485
Chromosome Location	chr6:133224268-133224269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1408061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911037	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493461	1.00[AMR][1000 genomes]
rs9493463	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133223800-133224600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133224200-133229000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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