Variant report

Variant	rs9483628
Chromosome Location	chr6:134227616-134227617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1001101	0.83[AMR][1000 genomes]
rs28681634	0.83[AMR][1000 genomes]
rs61105808	0.83[AMR][1000 genomes]
rs9483627	0.83[AMR][1000 genomes]
rs9493703	0.83[AMR][1000 genomes]
rs9493758	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134227200-134227800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:134227200-134227800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
3	chr6:134227200-134228000	Enhancers	Fetal Intestine Large	intestine
4	chr6:134227200-134230000	Strong transcription	Ovary	ovary
5	chr6:134227400-134228200	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:134227600-134228000	Strong transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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