Variant report

Variant	rs28681634
Chromosome Location	chr6:134229312-134229313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1001101	1.00[AMR][1000 genomes]
rs1577614	0.83[AMR][1000 genomes]
rs17062911	0.83[AMR][1000 genomes]
rs2327385	0.83[AMR][1000 genomes]
rs4896002	0.83[AMR][1000 genomes]
rs4896003	0.83[AMR][1000 genomes]
rs60079328	0.83[AMR][1000 genomes]
rs61105808	1.00[AMR][1000 genomes]
rs61155049	0.83[AMR][1000 genomes]
rs6929145	0.83[AMR][1000 genomes]
rs73559243	0.83[AMR][1000 genomes]
rs73774172	0.83[AMR][1000 genomes]
rs9483627	1.00[AMR][1000 genomes]
rs9483628	0.83[AMR][1000 genomes]
rs9493703	1.00[AMR][1000 genomes]
rs9493758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493759	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9493760	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134227200-134230000	Strong transcription	Ovary	ovary
2	chr6:134227800-134231000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:134228000-134237800	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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