Variant report
| Variant | rs17062911 |
|---|---|
| Chromosome Location | chr6:134149974-134149975 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1001101 | 0.83[AMR][1000 genomes] |
| rs10485158 | 1.00[ASN][1000 genomes] |
| rs11962472 | 1.00[ASN][1000 genomes] |
| rs11962509 | 1.00[ASN][1000 genomes] |
| rs11965014 | 1.00[ASN][1000 genomes] |
| rs1577613 | 1.00[ASN][1000 genomes] |
| rs17062869 | 1.00[ASN][1000 genomes] |
| rs17062925 | 1.00[CHB][hapmap] |
| rs17062978 | 1.00[ASN][1000 genomes] |
| rs17062984 | 1.00[ASN][1000 genomes] |
| rs17062987 | 1.00[ASN][1000 genomes] |
| rs17062995 | 1.00[ASN][1000 genomes] |
| rs17063036 | 1.00[ASN][1000 genomes] |
| rs2146766 | 1.00[ASN][1000 genomes] |
| rs2181548 | 1.00[ASN][1000 genomes] |
| rs28681634 | 0.83[AMR][1000 genomes] |
| rs4895997 | 1.00[ASN][1000 genomes] |
| rs4896002 | 1.00[ASN][1000 genomes] |
| rs4896003 | 1.00[ASN][1000 genomes] |
| rs4896004 | 1.00[ASN][1000 genomes] |
| rs4896005 | 1.00[ASN][1000 genomes] |
| rs4896009 | 1.00[ASN][1000 genomes] |
| rs61105808 | 0.83[AMR][1000 genomes] |
| rs6899644 | 1.00[ASN][1000 genomes] |
| rs6899722 | 1.00[ASN][1000 genomes] |
| rs6917396 | 1.00[ASN][1000 genomes] |
| rs6923985 | 1.00[ASN][1000 genomes] |
| rs6925803 | 1.00[CHB][hapmap] |
| rs6932794 | 1.00[ASN][1000 genomes] |
| rs6935870 | 1.00[ASN][1000 genomes] |
| rs6940630 | 1.00[ASN][1000 genomes] |
| rs73774103 | 1.00[ASN][1000 genomes] |
| rs73774134 | 1.00[ASN][1000 genomes] |
| rs9483627 | 0.83[AMR][1000 genomes] |
| rs9493703 | 0.83[AMR][1000 genomes] |
| rs9493754 | 1.00[CHB][hapmap] |
| rs9493758 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830812 | chr6:133993897-134165407 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv34122 | chr6:134089019-134378252 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:134138200-134151200 | Weak transcription | Fetal Lung | lung |
| 2 | chr6:134148400-134151600 | Weak transcription | A549 | lung |
