Variant report

Variant	rs4896005
Chromosome Location	chr6:134182893-134182894
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10485158	1.00[ASN][1000 genomes]
rs11962472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11962509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11965014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1577612	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1577613	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17062869	1.00[ASN][1000 genomes]
rs17062911	1.00[ASN][1000 genomes]
rs17062978	1.00[ASN][1000 genomes]
rs17062984	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062987	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062995	1.00[ASN][1000 genomes]
rs17063036	1.00[ASN][1000 genomes]
rs2146766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2181548	1.00[ASN][1000 genomes]
rs2327424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4895997	1.00[ASN][1000 genomes]
rs4896002	1.00[ASN][1000 genomes]
rs4896003	1.00[ASN][1000 genomes]
rs4896004	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896009	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6899644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6899722	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6906874	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917396	1.00[ASN][1000 genomes]
rs6923985	1.00[ASN][1000 genomes]
rs6932794	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935085	1.00[AMR][1000 genomes]
rs6935870	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6940630	1.00[ASN][1000 genomes]
rs73774103	1.00[ASN][1000 genomes]
rs73774134	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134182400-134183800	Weak transcription	Fetal Lung	lung
2	chr6:134182600-134183000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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