Variant report

Variant	rs1577612
Chromosome Location	chr6:134184165-134184166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11962472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062984	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17062987	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2146766	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327424	1.00[AMR][1000 genomes]
rs4896004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4896005	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4896009	0.81[AMR][1000 genomes]
rs6899644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899722	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6906874	1.00[AMR][1000 genomes]
rs6923985	0.81[AFR][1000 genomes]
rs6932794	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6935085	1.00[AMR][1000 genomes]
rs6935870	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134183000-134185200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:134183800-134184800	ZNF genes & repeats	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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