Variant report

Variant	rs1577613
Chromosome Location	chr6:134183947-134183948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10485158	1.00[ASN][1000 genomes]
rs11962472	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11962509	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11965014	1.00[ASN][1000 genomes]
rs17062869	1.00[ASN][1000 genomes]
rs17062911	1.00[ASN][1000 genomes]
rs17062922	0.89[YRI][hapmap]
rs17062925	1.00[CHB][hapmap]
rs17062978	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062984	1.00[ASN][1000 genomes]
rs17062987	1.00[ASN][1000 genomes]
rs17062995	1.00[ASN][1000 genomes]
rs17062998	1.00[AMR][1000 genomes]
rs17063036	1.00[ASN][1000 genomes]
rs17063105	0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs17063109	1.00[AMR][1000 genomes]
rs17063128	0.82[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2146766	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2181548	1.00[ASN][1000 genomes]
rs41406249	0.82[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs4895997	1.00[ASN][1000 genomes]
rs4896002	1.00[ASN][1000 genomes]
rs4896003	1.00[ASN][1000 genomes]
rs4896004	1.00[ASN][1000 genomes]
rs4896005	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4896008	0.91[AFR][1000 genomes]
rs4896009	1.00[ASN][1000 genomes]
rs6569915	0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6899644	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6899722	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6917396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6922477	1.00[AMR][1000 genomes]
rs6923985	1.00[ASN][1000 genomes]
rs6925803	1.00[CHB][hapmap]
rs6932794	1.00[ASN][1000 genomes]
rs6934561	1.00[AMR][1000 genomes]
rs6934895	1.00[AMR][1000 genomes]
rs6935870	1.00[ASN][1000 genomes]
rs6940630	1.00[ASN][1000 genomes]
rs6941444	1.00[AMR][1000 genomes]
rs73774103	1.00[ASN][1000 genomes]
rs73774134	1.00[ASN][1000 genomes]
rs7765728	1.00[AMR][1000 genomes]
rs9493754	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134183000-134185200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:134183800-134184800	ZNF genes & repeats	Fetal Lung	lung

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