Variant report

Variant	rs41406249
Chromosome Location	chr6:134155216-134155217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1577613	1.00[AMR][1000 genomes]
rs17062922	0.89[YRI][hapmap]
rs17062978	1.00[AMR][1000 genomes]
rs17062998	1.00[AMR][1000 genomes]
rs17063105	0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17063109	1.00[AMR][1000 genomes]
rs17063128	0.87[LWK][hapmap];1.00[AMR][1000 genomes]
rs6569915	0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6917396	1.00[AMR][1000 genomes]
rs6922477	1.00[AMR][1000 genomes]
rs6934561	1.00[AMR][1000 genomes]
rs6934895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765728	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3435508	chr6:134153809-134155707	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134154800-134155600	Active TSS	Fetal Brain Male	brain
2	chr6:134154800-134155600	Enhancers	HSMMtube	muscle
3	chr6:134154800-134156200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:134154800-134156200	Enhancers	A549	lung
5	chr6:134154800-134156600	Enhancers	Fetal Stomach	stomach
6	chr6:134154800-134157600	Enhancers	Fetal Lung	lung
7	chr6:134155000-134155400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:134155000-134155600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:134155000-134155600	Enhancers	HSMM	muscle
10	chr6:134155000-134155600	Enhancers	NHLF	lung
11	chr6:134155000-134155800	Enhancers	Ovary	ovary
12	chr6:134155000-134156200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:134155200-134155400	Flanking Active TSS	Fetal Kidney	kidney
14	chr6:134155200-134155400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:134155200-134155600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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