Variant report

Variant	rs17062922
Chromosome Location	chr6:134167998-134167999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1577613	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062978	1.00[AMR][1000 genomes]
rs17062998	1.00[AMR][1000 genomes]
rs17063105	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs17063109	1.00[AMR][1000 genomes]
rs17063128	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs41406249	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6569915	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6917396	1.00[AMR][1000 genomes]
rs6922477	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934561	1.00[AMR][1000 genomes]
rs6934895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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