Variant report

Variant	rs6569915
Chromosome Location	chr6:134208888-134208889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1577613	1.00[AMR][1000 genomes]
rs17062922	0.89[YRI][hapmap]
rs17062978	1.00[AMR][1000 genomes]
rs17062998	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063105	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063128	0.87[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41406249	0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6917396	1.00[AMR][1000 genomes]
rs6922477	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934895	1.00[AMR][1000 genomes]
rs6940630	0.83[AFR][1000 genomes]
rs6941444	1.00[AMR][1000 genomes]
rs7765728	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134207600-134209000	Active TSS	Fetal Kidney	kidney
2	chr6:134207600-134211400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:134207800-134209600	Weak transcription	NHLF	lung
4	chr6:134208200-134209400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
5	chr6:134208400-134209000	Active TSS	Ovary	ovary
6	chr6:134208600-134209000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:134208600-134209200	Enhancers	Fetal Stomach	stomach
8	chr6:134208800-134209000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
9	chr6:134208800-134209600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:134208800-134209800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:134208800-134210600	Bivalent/Poised TSS	Fetal Brain Male	brain
12	chr6:134208800-134212000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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