Variant report

Variant	rs6941444
Chromosome Location	chr6:134163879-134163880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1577613	1.00[AMR][1000 genomes]
rs17062978	1.00[AMR][1000 genomes]
rs17062998	1.00[AMR][1000 genomes]
rs17063105	1.00[AMR][1000 genomes]
rs17063109	1.00[AMR][1000 genomes]
rs17063128	1.00[AMR][1000 genomes]
rs41406249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6569915	1.00[AMR][1000 genomes]
rs6917396	1.00[AMR][1000 genomes]
rs6922477	1.00[AMR][1000 genomes]
rs6934561	1.00[AMR][1000 genomes]
rs6934895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134163000-134164000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:134163600-134164400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:134163800-134164200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:134163800-134166000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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