Variant report

Variant	rs17062998
Chromosome Location	chr6:134195550-134195551
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1577613	1.00[AMR][1000 genomes]
rs17062922	0.95[YRI][hapmap]
rs17062978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063105	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17063128	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41406249	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs4896008	0.81[AFR][1000 genomes]
rs6569915	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917396	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934895	1.00[AMR][1000 genomes]
rs6941444	1.00[AMR][1000 genomes]
rs7765728	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134186600-134198000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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