Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17062917	1.00[EUR][1000 genomes]
rs1855896	1.00[EUR][1000 genomes]
rs1855897	1.00[EUR][1000 genomes]
rs2031188	1.00[EUR][1000 genomes]
rs2146763	1.00[EUR][1000 genomes]
rs4895390	0.80[AMR][1000 genomes]
rs6925803	1.00[CHB][hapmap]
rs73545008	1.00[EUR][1000 genomes]
rs73545014	1.00[EUR][1000 genomes]
rs73563356	1.00[EUR][1000 genomes]
rs9373065	1.00[EUR][1000 genomes]
rs9389097	1.00[EUR][1000 genomes]
rs9389098	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389099	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389102	1.00[EUR][1000 genomes]
rs9389103	1.00[EUR][1000 genomes]
rs9399075	1.00[EUR][1000 genomes]
rs9402534	1.00[EUR][1000 genomes]
rs9483621	1.00[EUR][1000 genomes]
rs9483622	1.00[EUR][1000 genomes]
rs9493741	1.00[EUR][1000 genomes]
rs9493744	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493747	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9493754	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17062925	EGR2	trans	brain	seeQTL
rs17062925	PTGS2	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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