Variant report

Variant	rs4895390
Chromosome Location	chr6:134161114-134161115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1041712	0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1535615	0.97[ASN][1000 genomes]
rs2327430	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134157600-134162200	Weak transcription	Fetal Lung	lung
2	chr6:134159400-134161800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:134159400-134162800	Weak transcription	Fetal Kidney	kidney
4	chr6:134159600-134163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:134159600-134163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:134159600-134163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:134159600-134163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:134159800-134163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:134159800-134163200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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