Variant report

Variant	rs1535615
Chromosome Location	chr6:134159189-134159190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134158986..134159564-chr6:134237355..134238358,3	K562	blood:
2	chr6:134158762..134159601-chr6:134237448..134238214,3	MCF-7	breast:
3	chr6:134158641..134159506-chr6:134242064..134242709,3	MCF-7	breast:
4	chr6:134159004..134159583-chr6:134242495..134243019,2	MCF-7	breast:
5	chr6:133889734..133891144-chr6:134158380..134159654,7	MCF-7	breast:
6	chr6:133889774..133890628-chr6:134158616..134159373,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1001331	0.89[EUR][1000 genomes]
rs1041712	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11757968	0.83[EUR][1000 genomes]
rs1208268	0.86[EUR][1000 genomes]
rs1208279	0.93[CEU][hapmap]
rs1208282	0.92[EUR][1000 genomes]
rs1613895	0.85[EUR][1000 genomes]
rs1746015	0.93[EUR][1000 genomes]
rs1746016	0.98[EUR][1000 genomes]
rs1763937	0.93[EUR][1000 genomes]
rs1763938	0.98[EUR][1000 genomes]
rs2327430	1.00[JPT][hapmap]
rs4518518	0.87[EUR][1000 genomes]
rs4610586	0.87[EUR][1000 genomes]
rs4895390	0.97[ASN][1000 genomes]
rs6899948	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6900251	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6915061	0.82[EUR][1000 genomes]
rs6919282	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6920657	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7748433	0.89[EUR][1000 genomes]
rs9321418	0.90[EUR][1000 genomes]
rs9321419	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134157600-134159600	Active TSS	Hela-S3	cervix
2	chr6:134157600-134162200	Weak transcription	Fetal Lung	lung
3	chr6:134157800-134159400	Active TSS	A549	lung
4	chr6:134158600-134159600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:134158800-134159200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:134158800-134159200	Flanking Active TSS	NHEK	skin
7	chr6:134158800-134159400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:134158800-134159400	Active TSS	Esophagus	oesophagus
9	chr6:134158800-134159400	Active TSS	Rectal Smooth Muscle	rectum
10	chr6:134158800-134159400	Active TSS	Stomach Mucosa	stomach
11	chr6:134158800-134159400	Active TSS	HepG2	liver
12	chr6:134158800-134159400	Active TSS	NH-A	brain
13	chr6:134158800-134159600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:134158800-134159600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:134158800-134159600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:134158800-134159600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:134158800-134159600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:134158800-134159600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:134158800-134159600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr6:134158800-134159600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:134158800-134159600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:134158800-134159600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:134158800-134159600	Active TSS	Duodenum Mucosa	Duodenum
24	chr6:134158800-134159600	Active TSS	Fetal Intestine Large	intestine
25	chr6:134158800-134159600	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr6:134158800-134159600	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr6:134158800-134159600	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr6:134158800-134159600	Active TSS	Osteobl	bone
29	chr6:134158800-134159800	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:134158800-134159800	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:134158800-134160600	Active TSS	K562	blood
32	chr6:134159000-134159200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:134159000-134159200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
34	chr6:134159000-134159200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:134159000-134159200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
36	chr6:134159000-134159200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:134159000-134159200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:134159000-134159200	Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr6:134159000-134159200	Bivalent/Poised TSS	Fetal Stomach	stomach
40	chr6:134159000-134159200	Flanking Bivalent TSS/Enh	Left Ventricle	heart
41	chr6:134159000-134159200	Active TSS	Psoas Muscle	Psoas
42	chr6:134159000-134159200	Active TSS	Right Ventricle	heart
43	chr6:134159000-134159200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
44	chr6:134159000-134159200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr6:134159000-134159200	Active TSS	Thymus	Thymus
46	chr6:134159000-134159200	Active TSS	HMEC	breast
47	chr6:134159000-134159200	Active TSS	HUVEC	blood vessel
48	chr6:134159000-134159400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr6:134159000-134159400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:134159000-134159400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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