Variant report

Variant	rs1208282
Chromosome Location	chr6:134160256-134160257
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1001331	0.85[EUR][1000 genomes]
rs11751744	1.00[ASN][1000 genomes]
rs11757968	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208227	1.00[ASN][1000 genomes]
rs1208228	1.00[ASN][1000 genomes]
rs1208234	1.00[ASN][1000 genomes]
rs1208235	1.00[ASN][1000 genomes]
rs1208237	1.00[ASN][1000 genomes]
rs1208239	1.00[ASN][1000 genomes]
rs1208242	1.00[ASN][1000 genomes]
rs1208244	1.00[ASN][1000 genomes]
rs1208246	1.00[ASN][1000 genomes]
rs1208247	1.00[ASN][1000 genomes]
rs1208251	1.00[ASN][1000 genomes]
rs1208252	1.00[ASN][1000 genomes]
rs1208253	1.00[ASN][1000 genomes]
rs1208260	1.00[ASN][1000 genomes]
rs1208265	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208267	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208268	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535615	0.92[EUR][1000 genomes]
rs1575446	1.00[ASN][1000 genomes]
rs1613895	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616030	1.00[ASN][1000 genomes]
rs1746011	1.00[ASN][1000 genomes]
rs1746012	1.00[ASN][1000 genomes]
rs1746015	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746016	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17481786	1.00[ASN][1000 genomes]
rs1763937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763938	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1763941	1.00[ASN][1000 genomes]
rs1763944	1.00[ASN][1000 genomes]
rs1763945	1.00[ASN][1000 genomes]
rs2104261	1.00[ASN][1000 genomes]
rs41286216	1.00[ASN][1000 genomes]
rs41286218	1.00[ASN][1000 genomes]
rs4518518	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610586	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899948	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900251	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915061	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920657	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716050	1.00[ASN][1000 genomes]
rs7748433	0.85[EUR][1000 genomes]
rs9321418	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321419	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942130	1.00[ASN][1000 genomes]
rs942132	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134157600-134162200	Weak transcription	Fetal Lung	lung
2	chr6:134158800-134160600	Active TSS	K562	blood
3	chr6:134159400-134161800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:134159400-134162800	Weak transcription	Fetal Kidney	kidney
5	chr6:134159600-134163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:134159600-134163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:134159600-134163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:134159600-134163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:134159800-134163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:134159800-134163200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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