Variant report
| Variant | rs7748433 |
|---|---|
| Chromosome Location | chr6:134188837-134188838 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1001331 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1041712 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs11751744 | 0.80[EUR][1000 genomes] |
| rs11757968 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1208268 | 0.84[EUR][1000 genomes] |
| rs1208279 | 0.94[CEU][hapmap] |
| rs1208282 | 0.85[EUR][1000 genomes] |
| rs1535615 | 0.89[EUR][1000 genomes] |
| rs1613895 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17063055 | 0.92[ASN][1000 genomes] |
| rs1746015 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1746016 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1763937 | 0.85[EUR][1000 genomes] |
| rs1763938 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2327425 | 0.92[ASN][1000 genomes] |
| rs2327430 | 1.00[JPT][hapmap] |
| rs4518518 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4610586 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs57764276 | 0.92[ASN][1000 genomes] |
| rs6899948 | 0.88[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs6900251 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs6915061 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6919282 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs6920657 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9321418 | 0.82[EUR][1000 genomes] |
| rs9321419 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9483623 | 0.96[ASN][1000 genomes] |
| rs9483625 | 0.96[ASN][1000 genomes] |
| rs9493748 | 0.96[ASN][1000 genomes] |
| rs9493749 | 0.96[ASN][1000 genomes] |
| rs9493750 | 0.96[ASN][1000 genomes] |
| rs9493752 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34122 | chr6:134089019-134378252 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:134186600-134198000 | Weak transcription | Fetal Lung | lung |
