Variant report

Variant	rs11751744
Chromosome Location	chr6:134207758-134207759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:134207158-134207787	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
TCF21	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1001331	0.83[EUR][1000 genomes]
rs11757968	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208227	1.00[ASN][1000 genomes]
rs1208228	1.00[ASN][1000 genomes]
rs1208234	1.00[ASN][1000 genomes]
rs1208235	1.00[ASN][1000 genomes]
rs1208237	1.00[ASN][1000 genomes]
rs1208239	1.00[ASN][1000 genomes]
rs1208242	1.00[ASN][1000 genomes]
rs1208244	1.00[ASN][1000 genomes]
rs1208246	1.00[ASN][1000 genomes]
rs1208247	1.00[ASN][1000 genomes]
rs1208251	1.00[ASN][1000 genomes]
rs1208252	1.00[ASN][1000 genomes]
rs1208253	1.00[ASN][1000 genomes]
rs1208260	1.00[ASN][1000 genomes]
rs1208265	1.00[ASN][1000 genomes]
rs1208267	1.00[ASN][1000 genomes]
rs1208268	1.00[ASN][1000 genomes]
rs1208282	1.00[ASN][1000 genomes]
rs151105	0.90[EUR][1000 genomes]
rs151106	0.89[EUR][1000 genomes]
rs151107	0.90[EUR][1000 genomes]
rs151108	0.90[EUR][1000 genomes]
rs151109	0.90[EUR][1000 genomes]
rs1575446	1.00[ASN][1000 genomes]
rs1613895	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616030	1.00[ASN][1000 genomes]
rs1746011	1.00[ASN][1000 genomes]
rs1746012	1.00[ASN][1000 genomes]
rs1746015	1.00[ASN][1000 genomes]
rs17481786	1.00[ASN][1000 genomes]
rs1763937	1.00[ASN][1000 genomes]
rs1763941	1.00[ASN][1000 genomes]
rs1763944	1.00[ASN][1000 genomes]
rs1763945	1.00[ASN][1000 genomes]
rs183473	0.88[EUR][1000 genomes]
rs2104261	1.00[ASN][1000 genomes]
rs228853	0.90[EUR][1000 genomes]
rs229919	0.90[EUR][1000 genomes]
rs229921	0.89[EUR][1000 genomes]
rs229923	0.89[EUR][1000 genomes]
rs229924	0.90[EUR][1000 genomes]
rs229925	0.90[EUR][1000 genomes]
rs229926	0.90[EUR][1000 genomes]
rs229927	0.90[EUR][1000 genomes]
rs229928	0.90[EUR][1000 genomes]
rs229929	0.90[EUR][1000 genomes]
rs229930	0.89[EUR][1000 genomes]
rs229931	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs229932	0.82[EUR][1000 genomes]
rs41286216	1.00[ASN][1000 genomes]
rs41286218	1.00[ASN][1000 genomes]
rs4518518	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610586	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464168	0.90[EUR][1000 genomes]
rs6899948	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900251	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915061	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920657	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716050	1.00[ASN][1000 genomes]
rs7748433	0.80[EUR][1000 genomes]
rs9321418	1.00[ASN][1000 genomes]
rs9321419	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942130	1.00[ASN][1000 genomes]
rs942132	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134207000-134208400	Weak transcription	Ovary	ovary
2	chr6:134207400-134207800	Enhancers	NHLF	lung
3	chr6:134207600-134208200	Bivalent/Poised TSS	Fetal Lung	lung
4	chr6:134207600-134208600	Weak transcription	Fetal Stomach	stomach
5	chr6:134207600-134209000	Active TSS	Fetal Kidney	kidney
6	chr6:134207600-134211400	Weak transcription	Muscle Satellite Cultured Cells	--

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