Variant report

Variant	rs183473
Chromosome Location	chr6:134240403-134240404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11751744	0.88[EUR][1000 genomes]
rs151105	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151106	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs151107	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151108	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151109	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs228853	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs229919	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs229921	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs229923	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229924	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229925	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229926	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229927	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229928	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229929	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229930	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs229931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229932	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs464168	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899948	0.80[EUR][1000 genomes]
rs6900251	0.83[GIH][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs6919282	0.80[EUR][1000 genomes]
rs6920657	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134231400-134242000	Weak transcription	Ovary	ovary
2	chr6:134236600-134252800	Weak transcription	Right Atrium	heart
3	chr6:134237600-134241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:134238000-134240600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:134238400-134241800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:134238400-134245400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:134239000-134240800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:134239000-134245400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:134239200-134240600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:134239200-134245400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:134239600-134240600	Enhancers	HSMMtube	muscle
12	chr6:134239600-134245200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:134239800-134240600	Enhancers	GM12878-XiMat	blood
14	chr6:134240000-134246400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:134240400-134242000	Weak transcription	A549	lung

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