Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11751744	0.82[EUR][1000 genomes]
rs151105	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs151106	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs151107	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs151108	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs151109	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs183473	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228853	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs229919	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs229921	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs229923	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229924	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229925	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229926	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229927	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229928	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229929	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs229930	0.89[EUR][1000 genomes]
rs229931	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs464168	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6900251	0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs229932	PRPF6	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134231400-134242000	Weak transcription	Ovary	ovary
2	chr6:134236600-134252800	Weak transcription	Right Atrium	heart
3	chr6:134238400-134241800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:134238400-134245400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:134239000-134245400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:134239200-134245400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:134239600-134245200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:134240000-134246400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:134240400-134242000	Weak transcription	A549	lung
10	chr6:134240600-134242000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:134241600-134242400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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