Variant report

Variant	rs229931
Chromosome Location	chr6:134237634-134237635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133889714..133890548-chr6:134237352..134238167,5	K562	blood:
2	chr6:133258643..133259455-chr6:134237399..134237933,2	K562	blood:
3	chr6:134158762..134159601-chr6:134237448..134238214,3	MCF-7	breast:
4	chr6:134158986..134159564-chr6:134237355..134238358,3	K562	blood:
5	chr6:134157932..134160263-chr6:134237191..134238373,15	MCF-7	breast:
6	chr6:133889418..133890706-chr6:134237196..134238666,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223586	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11751744	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757968	0.81[EUR][1000 genomes]
rs151105	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151106	0.98[EUR][1000 genomes]
rs151107	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151108	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151109	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183473	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228853	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs229919	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs229921	0.98[EUR][1000 genomes]
rs229923	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229924	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229925	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229926	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229927	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229928	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229929	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229930	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs229932	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs464168	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899948	0.82[EUR][1000 genomes]
rs6900251	0.88[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs6919282	0.82[EUR][1000 genomes]
rs6920657	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134228000-134237800	Weak transcription	Fetal Stomach	stomach
2	chr6:134231400-134237800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:134231400-134242000	Weak transcription	Ovary	ovary
4	chr6:134236600-134252800	Weak transcription	Right Atrium	heart
5	chr6:134237200-134238000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:134237200-134240400	Enhancers	A549	lung
7	chr6:134237400-134237800	Enhancers	Fetal Kidney	kidney
8	chr6:134237400-134237800	Enhancers	Fetal Lung	lung
9	chr6:134237400-134238000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:134237400-134238000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:134237400-134238000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:134237400-134238000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:134237400-134238400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:134237400-134238400	Enhancers	Hela-S3	cervix
15	chr6:134237400-134238600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:134237400-134239200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:134237600-134237800	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:134237600-134238000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:134237600-134241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links