Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17062917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855896	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855897	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545070	0.97[AFR][1000 genomes]
rs73563356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373065	1.00[EUR][1000 genomes]
rs9389097	1.00[EUR][1000 genomes]
rs9389098	1.00[EUR][1000 genomes]
rs9389099	1.00[EUR][1000 genomes]
rs9389102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402534	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493744	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493745	0.97[AFR][1000 genomes]
rs9493746	0.97[AFR][1000 genomes]
rs9493747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134159400-134162800	Weak transcription	Fetal Kidney	kidney
2	chr6:134159600-134163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:134159600-134163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:134159600-134163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:134159600-134163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:134159800-134163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:134159800-134163200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:134162200-134163800	Enhancers	Fetal Lung	lung
9	chr6:134162400-134163800	Enhancers	Fetal Stomach	stomach

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