Variant report

Variant	rs73545014
Chromosome Location	chr6:134142537-134142538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF21-1	chr6:134142285-134142873	ENSG00000223586
2	lnc-TCF21-1	chr6:134142285-134142873	XLOC_005467

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17062917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545012	0.85[AFR][1000 genomes]
rs73545018	0.92[AFR][1000 genomes]
rs73545020	0.84[AFR][1000 genomes]
rs73563348	0.92[AFR][1000 genomes]
rs73563355	0.92[AFR][1000 genomes]
rs73563356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373065	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9389097	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9389098	1.00[EUR][1000 genomes]
rs9389099	1.00[EUR][1000 genomes]
rs9389102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399075	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134136800-134147800	Weak transcription	A549	lung
2	chr6:134137000-134142600	Weak transcription	Aorta	Aorta
3	chr6:134138200-134151200	Weak transcription	Fetal Lung	lung

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