Variant report

Variant	rs73545012
Chromosome Location	chr6:134141479-134141480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:134141433-134141483	HL-60	blood:	n/a
2	chr6:134141433-134141483	GM12891	blood:	n/a
3	chr6:134141433-134141483	HAEpiC	amniotic membrane:	n/a
4	chr6:134141433-134141483	HNPCEpiC	eye:	n/a
5	chr6:134141433-134141483	HRCEpiC	kidney:	n/a
6	chr6:134141433-134141483	NT2-D1	testis:	n/a
7	chr6:134141433-134141483	T-47D	breast:	n/a
8	chr6:134141433-134141483	K562	blood:	n/a
9	chr6:134141433-134141483	HMEC	breast:	n/a
10	chr6:134141433-134141483	GM06990	blood:	n/a
11	chr6:134141433-134141483	NHDF-neo	bronchial:	n/a
12	chr6:134141433-134141483	HCPEpiC	choroid plexus:	n/a
13	chr6:134141433-134141483	LNCaP	prostate:	n/a
14	chr6:134141433-134141483	CMK	blood:	n/a
15	chr6:134141433-134141483	MCF-7	breast:	n/a
16	chr6:134141433-134141483	NHBE	bronchial:	n/a
17	chr6:134141433-134141483	Jurkat	blood:	n/a
18	chr6:134141433-134141483	SKMC	muscle:	n/a
19	chr6:134141433-134141483	HRPEpiC	eye:	n/a
20	chr6:134141433-134141483	RPTEC	kidney:	n/a
21	chr6:134141433-134141483	A549	lung:	n/a
22	chr6:134141433-134141483	GM19239	blood:	n/a
23	chr6:134141433-134141483	HCT-116	colon:	n/a
24	chr6:134141433-134141483	NH-A	brain:	n/a
25	chr6:134141433-134141483	BJ	skin:	n/a
26	chr6:134141433-134141483	AG09319	gingival:	n/a
27	chr6:134141433-134141483	ovcar-3	ovarian:	n/a
28	chr6:134141433-134141483	HCM	heart:	n/a
29	chr6:134141433-134141483	SK-N-SH	brain:	n/a
30	chr6:134141433-134141483	HIPEpiC	eye:	n/a
31	chr6:134141433-134141483	HUVEC	blood vessel:	n/a
32	chr6:134141433-134141483	PFSK-1	brain:	n/a
33	chr6:134141433-134141483	SAEC	small airway:	n/a
34	chr6:134141433-134141483	Hepatocyte	liver:	n/a
35	chr6:134141433-134141483	AoSMC	blood vessel:	n/a
36	chr6:134141433-134141483	IMR90	lung:	fetal
37	chr6:134141433-134141483	HCF	heart:	n/a
38	chr6:134141433-134141483	H1-hESC	embryonic stem cell:	embryo
39	chr6:134141433-134141483	AG04450	lung:	fetal
40	chr6:134141433-134141483	HEK293	kidney:	embryo
41	chr6:134141433-134141483	NB4	blood:	n/a
42	chr6:134141433-134141483	ProgFib	skin:	n/a
43	chr6:134141433-134141483	HPAEpiC	pulmonary alveolar:	n/a
44	chr6:134141433-134141483	Hela-S3	cervix:	n/a
45	chr6:134141433-134141483	BE2_C	brain:	n/a
46	chr6:134141433-134141483	PANC-1	pancreas:	n/a
47	chr6:134141433-134141483	HRE	kidney:	n/a
48	chr6:134141433-134141483	AG10803	skin:	n/a
49	chr6:134141433-134141483	AG09309	skin:	n/a
50	chr6:134141433-134141483	GM12892	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000223586	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73545008	0.85[AFR][1000 genomes]
rs73545014	0.85[AFR][1000 genomes]
rs73545018	0.92[AFR][1000 genomes]
rs73545020	0.84[AFR][1000 genomes]
rs73563348	0.92[AFR][1000 genomes]
rs73563355	0.92[AFR][1000 genomes]
rs73563356	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134136000-134141600	Weak transcription	Fetal Kidney	kidney
2	chr6:134136800-134147800	Weak transcription	A549	lung
3	chr6:134137000-134142600	Weak transcription	Aorta	Aorta
4	chr6:134138200-134151200	Weak transcription	Fetal Lung	lung
5	chr6:134140600-134142200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:134141200-134141800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:134141200-134142000	Enhancers	HUES64 Cell Line	embryonic stem cell

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