Variant report

Variant	rs73563355
Chromosome Location	chr6:134138120-134138121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73545008	0.92[AFR][1000 genomes]
rs73545012	0.92[AFR][1000 genomes]
rs73545014	0.92[AFR][1000 genomes]
rs73545018	1.00[AFR][1000 genomes]
rs73545020	0.91[AFR][1000 genomes]
rs73563348	1.00[AFR][1000 genomes]
rs73563351	0.85[AFR][1000 genomes]
rs73563356	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134135400-134138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:134136000-134141600	Weak transcription	Fetal Kidney	kidney
3	chr6:134136800-134138200	Enhancers	Fetal Lung	lung
4	chr6:134136800-134138800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:134136800-134147800	Weak transcription	A549	lung
6	chr6:134137000-134142600	Weak transcription	Aorta	Aorta
7	chr6:134137600-134139200	Enhancers	Ovary	ovary
8	chr6:134137600-134140200	Enhancers	Fetal Stomach	stomach
9	chr6:134138000-134139000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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