Variant report

Variant	rs73563351
Chromosome Location	chr6:134136761-134136762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134136062..134139390-chr6:134141516..134143681,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223586	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73545018	0.85[AFR][1000 genomes]
rs73553007	1.00[AMR][1000 genomes]
rs73553037	1.00[AMR][1000 genomes]
rs73563336	1.00[AMR][1000 genomes]
rs73563348	0.85[AFR][1000 genomes]
rs73563355	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134135400-134136800	Enhancers	Fetal Stomach	stomach
2	chr6:134135400-134136800	Enhancers	Ovary	ovary
3	chr6:134135400-134137800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:134135400-134138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:134135600-134137000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:134135600-134137000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:134135600-134137000	Enhancers	NHDF-Ad	bronchial
8	chr6:134135600-134137800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:134135600-134137800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:134135600-134138000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:134135800-134138000	Enhancers	Osteobl	bone
12	chr6:134136000-134137200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:134136000-134141600	Weak transcription	Fetal Kidney	kidney
14	chr6:134136200-134136800	ZNF genes & repeats	A549	lung
15	chr6:134136200-134136800	Enhancers	NHEK	skin
16	chr6:134136200-134137800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:134136400-134136800	Flanking Active TSS	Fetal Lung	lung
18	chr6:134136400-134136800	Enhancers	HSMM	muscle
19	chr6:134136600-134136800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:134136600-134136800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:134136600-134136800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:134136600-134136800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:134136600-134136800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:134136600-134136800	Enhancers	Gastric	stomach
25	chr6:134136600-134137000	Enhancers	Aorta	Aorta

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